to either classification tasks or quantum chemistry
simulations, few have tackled both within a single,
cohesive framework focused on a biologically
relevant set of genes (Roosan, 2024a; Beer, 2022). By
jointly analyzing structural coordinates alongside
genetic sequences, this research reveals that quantum
algorithms can extract insights from dual data streams
more holistically than purely classical approaches
(Wu et al., 2024). This study advances computational
biology by integrating structural and genomic data of
the TART-T and TART-C genes using quantum
computing, demonstrating that quantum algorithms
extract insights from dual data streams more
holistically than classical methods (Roosan, 2024a;
Beer, 2022; Wu et al., 2024). A robust QNN predicts
hotspot mutations using amplitude-encoded structural
and genetic features, leveraging superposition to
efficiently handle complex datasets (Quantum
Computing in Bioinformatics Review, 2024; Roosan,
2024c; Interface-Driven Peptide Folding, 2024).
VQE simulates biomolecular processes at the
electronic level for TART-T and TART-C, offering
accurate energy estimates on near-term devices
(Cleveland Clinic & IBM Research, 2024; Roosan,
2024b). Quantum computing’s alignment with
quantum mechanics enables precise modeling of
molecular interactions, surpassing classical
limitations (Roosan, 2024b; Wu et al., 2024). The
approach suggests potential for accelerating multi-
omics analyses and adapting to other systems
(Roosan & Chok et al., 2024; Roosan, 2022). Despite
hardware constraints like noise and limited qubits
(IBM’s Error Correction Breakthrough, 2024), this
research highlights quantum computing’s promise as
a transformative tool in computational biology
(Quantum Computing in Bioinformatics Review,
2024; Cleveland Clinic & IBM Research, 2024).
5 CONCLUSIONS
In conclusion, this work demonstrates a significant
leap forward in unifying quantum computing
approaches for both classification and molecular
energy estimation tasks in computational biology. By
coupling a QNN and a VQE within a cohesive
pipeline, we have shown that TART-T and TART-C
gene analyses—encompassing genomic sequence
data and molecular structural information—can be
conducted at a high level of accuracy and fidelity.
This work marks a key advance in using quantum
computing for computational biology, integrating
classification and molecular energy estimation.
Focusing on the TART-T and TART-C genes, a QNN
accurately predicts mutations by encoding structural
and genetic data into quantum states, while a VQE
delivers reliable molecular energy estimates. These
results highlight quantum computing’s potential for
multi-omics data integration and quantum chemistry
simulations in biological research. Despite challenges
like hardware noise and qubit limitations, the hybrid
classical-quantum approach lays a strong foundation
for future studies into the quantum aspects of
biological systems.
ACKNOWLEDGEMENTS
We acknowledge Merrimack College for support.
REFERENCES
Abbas, A., Sutter, D., Zoufal, C., Lucchi, A., Figalli, A., &
Woerner, S. (2021). The power of quantum neural
networks. Nature Computational Science, 1(6), 403–
409. https://doi.org/10.1038/s43588-021-00084-1
Beer, K. (2022). Quantum neural networks.
https://doi.org/10.15488/11896
Beer, K., Bondarenko, D., Farrelly, T., Osborne, T. J.,
Salzmann, R., Scheiermann, D., & Wolf, R. (2020).
Training deep quantum neural networks. Nature
Communications, 11(1), 808. https://doi.org/10.1038/
s41467-020-14454-2
Callison, A., & Chancellor, N. (2022). Hybrid quantum-
classical algorithms in the noisy intermediate-scale
quantum era and beyond. Physical Review A, 106(1),
010101. https://doi.org/10.1103/PhysRevA.106.010101
Cerezo, M., Sharma, K., Arrasmith, A., & Coles, P. J.
(2022). Variational quantum state eigensolver. Npj
Quantum Information, 8(1), 113. https://doi.org/
10.1038/s41534-022-00611-6
Cleveland Clinic & IBM Research. (2024, May 29).
Researchers apply quantum computing methods to
protein structure prediction. Journal of Chemical
Theory and Computation. Retrieved from
https://newsroom.clevelandclinic.org/2024/05/29/clev
eland-clinic-and-ibm-researchers-apply-quantum-
computing-methods-to-protein-structure-prediction
Funcke, L., Hartung, T., Jansen, K., Kühn, S., Schneider,
M., Stornati, P., & Wang, X. (2022). Towards quantum
simulations in particle physics and beyond on noisy
intermediate-scale quantum devices. Philosophical
Transactions of the Royal Society A: Mathematical,
Physical and Engineering Sciences, 380(2216),
20210062. https://doi.org/10.1098/rsta.2021.0062
IBM’s Error Correction Breakthrough. (2024, March).
Nature. Retrieved from https://www.ibm.com/
quantum/blog/nature-qldpc-error-correction
Interface-Driven Peptide Folding. (2024, January). arXiv.
Retrieved from https://arxiv.org/abs/2401.05075