Authors:
Adeethyia Shankar
1
;
Stephanie Chang
1
;
Xiaodi Wang
1
and
Yongzhong Zhao
2
Affiliations:
1
Department of Mathematics, Western Connecticut State University, 181 White Street, Danbury, U.S.A.
;
2
Department of Cellular and Molecular Medicine, Cleveland Clinic, Cleveland, U.S.A.
Keyword(s):
Diabetes Mellitus, Discrete M-band Wavelet Transform, Machine Learning, Precision Medicine, Data Visualization, t-SNE, UMAP.
Abstract:
It is estimated that 422 million people around the world have diabetes mellitus (DM)—a devastating, complex, and highly heterogeneous disease—requesting better interventions based on disease subtyping. In this research, we utilize the discrete wavelet transform (DWT) to decompose and denoise DM data. Using DWT, we enhance heart rate variability (HRV) based DM diagnosis, data visualization of the disparities in Human Microbiome Project (HMP) data (gut bacteria, metabolomics, proteomics, RNA sequencing, targeted proteomics, and transcriptomics data) using demographic features, and insulin resistance prediction. We also attempt to forecast continuous glucose monitoring (CGM) ahead by 90 minutes because CGM is unable to provide real-time blood glucose measurements. We achieve 91.9% diagnosis accuracy for Type 1 DM using Random Forest on data transformed with DWT, holding the potential for usage in clinics. In addition, our DWT-based t-SNE and UMAP explorative analysis of HMP data support
subtypes of prediabetic patients stratified by sex, race, and age. Moreover, DWT-based transformations provide multi-view clustering that any other methods would not provide on metabolomics, proteomics, RNA sequencing, targeted proteomics, and transcriptomics data and outperform those without DWT. Taken together, DWT-based machine learning approaches enable a fine resolution of subtyping DM towards precision medicine.
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