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Authors: Hugo Saldanha ; Edward Ribeiro ; Maristela Holanda ; Aleteia Araujo ; Genaina Rodrigues ; Maria Emilia Walter ; João Carlos Setubal and Alberto Dávila

Affiliation: University of Brasilia, Virginia Bioinformatics Institute and FIOCRUZ, Brazil

Keyword(s): Cloud architecture, Bioinformatics workflow, High-throughput genome sequencing.

Related Ontology Subjects/Areas/Topics: Cloud Computing ; Cloud Computing Architecture ; Cloud Middleware Frameworks ; Cloud Standards ; Collaboration and e-Services ; Communication and Software Technologies and Architectures ; Context ; Data Engineering ; e-Business ; Enterprise Information Systems ; Fundamentals ; Languages, Tools and Architectures ; Mobile Software and Services ; Model-Driven Software Development ; Ontologies and the Semantic Web ; Paradigm Trends ; Platforms and Applications ; SAAS, PAAS, IAAS ; Service Composition and Mashups ; Service-Oriented Architectures ; Services Science ; Software Agents and Internet Computing ; Software Engineering ; Software Engineering Methods and Techniques ; Technology Platforms ; Telecommunications ; Web Services ; Wireless Information Networks and Systems

Abstract: Cloud computing has emerged as a promising platform for large scale data intensive scientific research, i.e., processing tasks that use hundreds of hours of CPU time and petabytes of data storage. Despite being object of current research, efforts are mainly based on MapReduce in order to have processing performed in clouds. This article describes the BioNimbus project, which aims to define an architecture and to create a framework for easy and flexible integration and support for distributed execution of bioinformatics tools in a cloud environment, not only tied to the MapReduce paradigm. As a result, we leverage cloud elasticity, fault tolerance and, at the same time, significantly improve the storage capacity and execution time of bioinformatics tasks, mainly of large scale genome sequencing projects.

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Paper citation in several formats:
Saldanha, H.; Ribeiro, E.; Holanda, M.; Araujo, A.; Rodrigues, G.; Emilia Walter, M.; Carlos Setubal, J. and Dávila, A. (2011). A CLOUD ARCHITECTURE FOR BIOINFORMATICS WORKFLOWS. In Proceedings of the 1st International Conference on Cloud Computing and Services Science - CLOSER, ISBN 978-989-8425-52-2; ISSN 2184-5042, pages 477-483. DOI: 10.5220/0003394004770483

@conference{closer11,
author={Hugo Saldanha. and Edward Ribeiro. and Maristela Holanda. and Aleteia Araujo. and Genaina Rodrigues. and Maria {Emilia Walter}. and João {Carlos Setubal}. and Alberto Dávila.},
title={A CLOUD ARCHITECTURE FOR BIOINFORMATICS WORKFLOWS},
booktitle={Proceedings of the 1st International Conference on Cloud Computing and Services Science - CLOSER,},
year={2011},
pages={477-483},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003394004770483},
isbn={978-989-8425-52-2},
issn={2184-5042},
}

TY - CONF

JO - Proceedings of the 1st International Conference on Cloud Computing and Services Science - CLOSER,
TI - A CLOUD ARCHITECTURE FOR BIOINFORMATICS WORKFLOWS
SN - 978-989-8425-52-2
IS - 2184-5042
AU - Saldanha, H.
AU - Ribeiro, E.
AU - Holanda, M.
AU - Araujo, A.
AU - Rodrigues, G.
AU - Emilia Walter, M.
AU - Carlos Setubal, J.
AU - Dávila, A.
PY - 2011
SP - 477
EP - 483
DO - 10.5220/0003394004770483