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Author: Leonid Molokov

Affiliation: Chalmers University of Technology, Sweden

ISBN: 978-989-8425-28-7

Keyword(s): Bioinformatics, Proteomics, Peptide mass fingerprinting, Error removal, Union editing, Set cover, Hitting set, Simulations.

Related Ontology Subjects/Areas/Topics: Artificial Intelligence ; BioInformatics & Pattern Discovery ; Knowledge Discovery and Information Retrieval ; Knowledge-Based Systems ; Symbolic Systems

Abstract: Peptide Mass Fingerprinting (PMF) for long has been a widely used and reliable method for protein identification. However it faced several problems, the most important of which is inability of classical methods to deal with protein mixtures. To cope with this problem, more costly experimental techniques are employed. We investigate, whether it is possible to extract more information from PMF by more thorough data analysis. To do this, we propose a novel method to remove noise from the data and show how the results can be interpreted in a different way. We also provide simulation results suggesting our method can be used for analysis of small mixtures.

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Paper citation in several formats:
Molokov, L. (2010). APPLICATION OF COMBINATORIAL METHODS TO PROTEIN IDENTIFICATION IN PEPTIDE MASS FINGERPRINTING.In Proceedings of the International Conference on Knowledge Discovery and Information Retrieval - Volume 1: KDIR, (IC3K 2010) ISBN 978-989-8425-28-7, pages 307-313. DOI: 10.5220/0003102703070313

@conference{kdir10,
author={Leonid Molokov.},
title={APPLICATION OF COMBINATORIAL METHODS TO PROTEIN IDENTIFICATION IN PEPTIDE MASS FINGERPRINTING},
booktitle={Proceedings of the International Conference on Knowledge Discovery and Information Retrieval - Volume 1: KDIR, (IC3K 2010)},
year={2010},
pages={307-313},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003102703070313},
isbn={978-989-8425-28-7},
}

TY - CONF

JO - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval - Volume 1: KDIR, (IC3K 2010)
TI - APPLICATION OF COMBINATORIAL METHODS TO PROTEIN IDENTIFICATION IN PEPTIDE MASS FINGERPRINTING
SN - 978-989-8425-28-7
AU - Molokov, L.
PY - 2010
SP - 307
EP - 313
DO - 10.5220/0003102703070313

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