loading
Papers Papers/2022 Papers Papers/2022

Research.Publish.Connect.

Paper

Paper Unlock

Authors: Juan Raphael Diaz Simões 1 ; Paul Bourgine 2 ; Denis Grebenkov 1 and Nadine Peyriéras 1

Affiliations: 1 Université Paris-Saclay, France ; 2 Université Paris-Saclay and Complex Systems Institute Paris Île-de-France, France

Keyword(s): Animal Embryogenesis, Cell Lineage, Clustering, Path Integrals.

Related Ontology Subjects/Areas/Topics: Applications ; Bioinformatics and Systems Biology ; Biomedical Engineering ; Biomedical Signal Processing ; Biometrics ; Biometrics and Pattern Recognition ; Clustering ; Multimedia ; Multimedia Signal Processing ; Pattern Recognition ; Software Engineering ; Telecommunications ; Theory and Methods

Abstract: The recent availability of complete cell lineages from live imaging data opens the way to novel methodologies for the automated analysis of cell dynamics in animal embryogenesis. We propose a method for the calculation of measure-based dissimilarities between cells. These dissimilarity measures allow the use of clustering algorithms for the inference of time-persistent patterns. The method is applied to the digital cell lineages reconstructed from live zebrafish embryos imaged from 6 to 13 hours post fertilization. We show that the position and velocity of cells are sufficient to identify relevant morphological features including bilateral symmetry and coherent cell domains. The method is flexible enough to readily integrate larger sets of measures opening the way to the automated identification of morphogenetic fields.

CC BY-NC-ND 4.0

Sign In Guest: Register as new SciTePress user now for free.

Sign In SciTePress user: please login.

PDF ImageMy Papers

You are not signed in, therefore limits apply to your IP address 3.144.189.177

In the current month:
Recent papers: 100 available of 100 total
2+ years older papers: 200 available of 200 total

Paper citation in several formats:
Diaz Simões, J.; Bourgine, P.; Grebenkov, D. and Peyriéras, N. (2017). Cell Trajectory Clustering: Towards the Automated Identification of Morphogenetic Fields in Animal Embryogenesis. In Proceedings of the 6th International Conference on Pattern Recognition Applications and Methods - ICPRAM; ISBN 978-989-758-222-6; ISSN 2184-4313, SciTePress, pages 746-752. DOI: 10.5220/0006259407460752

@conference{icpram17,
author={Juan Raphael {Diaz Simões}. and Paul Bourgine. and Denis Grebenkov. and Nadine Peyriéras.},
title={Cell Trajectory Clustering: Towards the Automated Identification of Morphogenetic Fields in Animal Embryogenesis},
booktitle={Proceedings of the 6th International Conference on Pattern Recognition Applications and Methods - ICPRAM},
year={2017},
pages={746-752},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0006259407460752},
isbn={978-989-758-222-6},
issn={2184-4313},
}

TY - CONF

JO - Proceedings of the 6th International Conference on Pattern Recognition Applications and Methods - ICPRAM
TI - Cell Trajectory Clustering: Towards the Automated Identification of Morphogenetic Fields in Animal Embryogenesis
SN - 978-989-758-222-6
IS - 2184-4313
AU - Diaz Simões, J.
AU - Bourgine, P.
AU - Grebenkov, D.
AU - Peyriéras, N.
PY - 2017
SP - 746
EP - 752
DO - 10.5220/0006259407460752
PB - SciTePress

- Science and Technology Publications, Lda.
RESOURCES

Proceedings

Papers

Authors

Ontology

CONTACTS

Science and Technology Publications, Lda
Avenida de S. Francisco Xavier, Lote 7 Cv. C,
2900-616 Setúbal, Portugal.

Phone: +351 265 520 185 (National fixed network call)
Fax: +351 265 520 186
Email: info@scitepress.org

EXTERNAL LINKS

PRIMORIS

INSTICC

SCITEVENTS

CROSSREF

PROCEEDINGS SUBMITTED FOR INDEXATION BY:

dblp

Ei Compendex

SCOPUS

Semantic Scholar

Google Scholar

Microsoft Academic