loading
Papers

Research.Publish.Connect.

Paper

Paper Unlock

Authors: Jyh-Jong Tsay 1 ; Bo-Liang Wu 2 and Guo-Gen Huang 2

Affiliations: 1 National Chung Cheng University, Taiwan ; 2 National Chung-Cheng University, Taiwan

ISBN: 978-989-674-019-1

Keyword(s): Pathway layout, Forced-directed layout, Hierarchical layout, Pathway visualization.

Related Ontology Subjects/Areas/Topics: Artificial Intelligence ; Bioinformatics ; Biomedical Engineering ; Soft Computing ; Visualization

Abstract: Many complex pathways are described as hierarchical structures in which a pathway is recursively partitioned into several sub-pathways, and organized hierarchically as a tree. The hierarchical structure provides a natural way to visualize the global structure of a complex pathway. Recently, a hierarchically organized layout algorithm HOLY which takes the advantages of the hierarchical structures inherent in complex pathways has been proposed. In this paper, we present a new layout algorithm HOLY-II which follows the basic principle of HOLY, but improves HOLY by introducing a new algorithm for joining layouts, one of the crucial tasks in HOLY. Experiment shows that HOLY-II is able to produce layouts which clearly render both the global structures and the local structures of complex pathways, and gives better visualization for many examples from MetaCyc, CADLIVE and HOLY.

PDF ImageFull Text

Download
CC BY-NC-ND 4.0

Sign In Guest: Register as new SciTePress user now for free.

Sign In SciTePress user: please login.

PDF ImageMy Papers

You are not signed in, therefore limits apply to your IP address 18.232.55.175

In the current month:
Recent papers: 100 available of 100 total
2+ years older papers: 200 available of 200 total

Paper citation in several formats:
Tsay J.; Wu B.; Huang G. and (2010). HOLY-II: IMPROVED HIERARCHICALLY ORGANIZED LAYOUT FOR VISUALIZATION OF BIOCHEMICAL COMPLEX PATHWAYS.In Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010) ISBN 978-989-674-019-1, pages 135-140. DOI: 10.5220/0002725501350140

@conference{bioinformatics10,
author={Jyh{-}Jong Tsay and Bo{-}Liang Wu and Guo{-}Gen Huang},
title={HOLY-II: IMPROVED HIERARCHICALLY ORGANIZED LAYOUT FOR VISUALIZATION OF BIOCHEMICAL COMPLEX PATHWAYS},
booktitle={Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010)},
year={2010},
pages={135-140},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0002725501350140},
isbn={978-989-674-019-1},
}

TY - CONF

JO - Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010)
TI - HOLY-II: IMPROVED HIERARCHICALLY ORGANIZED LAYOUT FOR VISUALIZATION OF BIOCHEMICAL COMPLEX PATHWAYS
SN - 978-989-674-019-1
AU - Tsay, J.
AU - Wu, B.
AU - Huang, G.
PY - 2010
SP - 135
EP - 140
DO - 10.5220/0002725501350140

Login or register to post comments.

Comments on this Paper: Be the first to review this paper.