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Authors: Gonzalo Vera and Remo Suppi

Affiliation: Universitat Autònoma de Barcelona, Spain

ISBN: 978-989-674-019-1

Keyword(s): Legacy applications, R language, Parallel computing, Multicore systems.

Related Ontology Subjects/Areas/Topics: Algorithms and Software Tools ; Bioinformatics ; Biomedical Engineering ; Biostatistics and Stochastic Models

Abstract: Current innovations in processor performance, focused to keep the growth rate of the last years, are mainly based on providing several processing units within the same chip. With new underlying multicore processors, traditional sequential applications have to be adapted with parallel programming techniques to take advantage of the new processing capabilities. There exists a great variety of libraries, middlewares, and frameworks to assist the parallelization of such applications. However, in many cases, specially with classical scientific applications, due to several limitations ranging from technical incompatibilities to simply lack of knowledge, this evolution cannot always be achieved. We here present our experiences providing an alternative for two situations where former contributions could not provide a satisfactory solution to our needs: adapting a mature non-thread-safe C coded application, the R language interpreter, and providing support for the automatic parallelization of R scripts in multicore systems. (More)

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Paper citation in several formats:
Vera G.; Suppi R. and (2010). TOWARDS THE EVOLUTION OF LEGACY APPLICATIONS TO MULTICORE SYSTEMS - Experiences Parallelizing R.In Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010) ISBN 978-989-674-019-1, pages 250-256. DOI: 10.5220/0002746302500256

@conference{bioinformatics10,
author={Gonzalo Vera and Remo Suppi},
title={TOWARDS THE EVOLUTION OF LEGACY APPLICATIONS TO MULTICORE SYSTEMS - Experiences Parallelizing R},
booktitle={Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010)},
year={2010},
pages={250-256},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0002746302500256},
isbn={978-989-674-019-1},
}

TY - CONF

JO - Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010)
TI - TOWARDS THE EVOLUTION OF LEGACY APPLICATIONS TO MULTICORE SYSTEMS - Experiences Parallelizing R
SN - 978-989-674-019-1
AU - Vera, G.
AU - Suppi, R.
PY - 2010
SP - 250
EP - 256
DO - 10.5220/0002746302500256

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