GENOME HALVING BY BLOCK INTERCHANGE

Antoine Thomas; Aïda Ouangraoua; Jean-Stéphane Varré

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Paper

GENOME HALVING BY BLOCK INTERCHANGE

Topics: Algorithms and Software Tools; Sequence Analysis

In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 0BIOSTEC, 58-65, 2012 , Vilamoura, Algarve, Portugal

Authors: Antoine Thomas ¹ ; Aïda Ouangraoua ¹ and Jean-Stéphane Varré ²

Affiliations: ¹ LIFL-INRIA, France ; ² Université Lille 1 INRIA Lille, France

Keyword(s): Genome duplication, Genome Halving, Block interchange.

Abstract: We address the problem of finding the minimal number of block interchanges required to transform a duplicated linear genome into a tandem duplicated linear genome. We provide a formula for the distance as well as a polynomial time algorithm for the sorting problem.

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Paper citation in several formats:

Thomas, A.; Ouangraoua, A. and Varré, J. (2012). GENOME HALVING BY BLOCK INTERCHANGE. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS; ISBN 978-989-8425-90-4; ISSN 2184-4305, SciTePress, pages 58-65. DOI: 10.5220/0003757200580065

@conference{bioinformatics12,
author={Antoine Thomas. and Aïda Ouangraoua. and Jean{-}Stéphane Varré.},
title={GENOME HALVING BY BLOCK INTERCHANGE},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS},
year={2012},
pages={58-65},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003757200580065},
isbn={978-989-8425-90-4},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS
TI - GENOME HALVING BY BLOCK INTERCHANGE
SN - 978-989-8425-90-4
IS - 2184-4305
AU - Thomas, A.
AU - Ouangraoua, A.
AU - Varré, J.
PY - 2012
SP - 58
EP - 65
DO - 10.5220/0003757200580065
PB - SciTePress