loading
Documents

Research.Publish.Connect.

Paper

Paper Unlock

Authors: Jyh-Jong Tsay ; Bo-Liang Wu and Hou-Ji Dai

Affiliation: National Chung-Cheng University, Taiwan

ISBN: 978-989-8425-36-2

Keyword(s): Pathway Database Integration, Data Matching, KEGG, MetaCyc.

Related Ontology Subjects/Areas/Topics: Algorithms and Software Tools ; Bioinformatics ; Biomedical Engineering ; Biostatistics and Stochastic Models ; Data Mining and Machine Learning ; Databases and Data Management ; Web Services in Bioinformatics

Abstract: Most of biological databases provide cross links that point to data records describing the same object in other databases. However, as more and more databases are available, manually creating and maintaining cross links becomes very time consuming, if not impossible. Existing databases provide only a small portion of all possible links. In this paper, we present a database cross link server BioDBLink that can automatically collect and generate cross links among biological databases. The core of BioDBLink is a data matching technique that identifies and matches data records or elements describing the same object among pathway databases. Experiment on a data set collected from several pathway, enzyme and compound databases shows that our approach is able to identify most of the cross links provided by current databases, discover a large number of missing links, and detect inconsistency and duplicate errors.

PDF ImageFull Text

Download
Sign In Guest: Register as new SciTePress user now for free.

Sign In SciTePress user: please login.

PDF ImageMy Papers

You are not signed in, therefore limits apply to your IP address 3.84.139.101

In the current month:
Recent papers: 100 available of 100 total
2+ years older papers: 200 available of 200 total

Paper citation in several formats:
Tsay, J.; Wu, B. and Dai, H. (2011). BIODBLINK: MULTI-LEVEL DATA MATCHING FOR AUTOMATIC GENERATION OF CROSS LINKS AMONG BIOCHEMICAL PATHWAY DATABASES.In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2011) ISBN 978-989-8425-36-2, pages 125-130. DOI: 10.5220/0003136601250130

@conference{bioinformatics11,
author={Jyh{-}Jong Tsay. and Bo{-}Liang Wu. and Hou{-}Ji Dai.},
title={BIODBLINK: MULTI-LEVEL DATA MATCHING FOR AUTOMATIC GENERATION OF CROSS LINKS AMONG BIOCHEMICAL PATHWAY DATABASES},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2011)},
year={2011},
pages={125-130},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003136601250130},
isbn={978-989-8425-36-2},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2011)
TI - BIODBLINK: MULTI-LEVEL DATA MATCHING FOR AUTOMATIC GENERATION OF CROSS LINKS AMONG BIOCHEMICAL PATHWAY DATABASES
SN - 978-989-8425-36-2
AU - Tsay, J.
AU - Wu, B.
AU - Dai, H.
PY - 2011
SP - 125
EP - 130
DO - 10.5220/0003136601250130

Login or register to post comments.

Comments on this Paper: Be the first to review this paper.