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Authors: Nic Herndon and Doina Caragea

Affiliation: Kansas State University, United States

ISBN: 978-989-8565-35-8

Keyword(s): Naïve Bayes, Domain Adaptation, Supervised Learning, Semi-supervised Learning, Self-training, Biological Sequences, Protein Localization.

Related Ontology Subjects/Areas/Topics: Bioinformatics ; Biomedical Engineering ; Data Mining and Machine Learning ; Sequence Analysis

Abstract: The increased volume of biological data requires automatic computation tools to analyze it. Although machine learning methods have been successfully used with biological sequences in a supervised framework, their accuracy usually suffers when a classifier is learned on a source domain and applied to a different, less studied domain, in a domain adaptation framework. To address this issue, we propose to use an algorithm that combines labeled sequences from a well studied organism, the source domain, with labeled and unlabeled sequences from a related, less studied organism, the target domain. Our experimental results show that this algorithm has high classifying accuracy on the target domain.

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Paper citation in several formats:
Herndon, N.; Herndon, N.; Caragea, D. and Caragea, D. (2013). Naïve Bayes Domain Adaptation for Biological Sequences.In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2013) ISBN 978-989-8565-35-8, pages 62-70. DOI: 10.5220/0004245500620070

@conference{bioinformatics13,
author={Nic Herndon. and Nic Herndon. and Doina Caragea. and Doina Caragea.},
title={Naïve Bayes Domain Adaptation for Biological Sequences},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2013)},
year={2013},
pages={62-70},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0004245500620070},
isbn={978-989-8565-35-8},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2013)
TI - Naïve Bayes Domain Adaptation for Biological Sequences
SN - 978-989-8565-35-8
AU - Herndon, N.
AU - Herndon, N.
AU - Caragea, D.
AU - Caragea, D.
PY - 2013
SP - 62
EP - 70
DO - 10.5220/0004245500620070

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