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Authors: Fagner Leal Pantoja 1 ; Marco Antonio de Carvalho Filho 2 and André Santanchè 1

Affiliations: 1 Institute of Computing, University of Campinas, Campinas, Brazil ; 2 Faculty of Veterinary Medical Education, Utrecht University, Utrecht, The Netherlands

Keyword(s): Semantic Web, Natural Language Processing, Machine Learning, Citizen Science, Clinical Reasoning.

Abstract: We propose a new approach to support human agents to annotate semantic concepts in free-text sentences in the biomedical domain. Using our markdown-derived language called Versum, authors can easily annotate relevant terms while producing content for Citizen Science systems. Besides, an embedded Automatic Annotation Mechanism suggests semantic concepts for the author. It implements a Named Entity Recognition task using a hybrid approach: (1) a Transformer-based Deep Neural Network and (2) an Ontology-based method. We conducted a case study running over content produced in the Harena e-learning system, which intends to teach Clinical Reasoning to students using Clinical Cases. Results of this pilot evaluation suggest the potential of Harena Semantics to engage volunteers in the production of semantic, agent-centered resources on crowdsourcing systems.

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Paper citation in several formats:
Pantoja, F.; Filho, M. and Santanchè, A. (2022). Harena Semantics: A Framework to Support Semantic Annotation in Citizen Science Systems. In Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2022) - HEALTHINF; ISBN 978-989-758-552-4; ISSN 2184-4305, SciTePress, pages 336-343. DOI: 10.5220/0010785300003123

@conference{healthinf22,
author={Fagner Leal Pantoja. and Marco Antonio de Carvalho Filho. and André Santanchè.},
title={Harena Semantics: A Framework to Support Semantic Annotation in Citizen Science Systems},
booktitle={Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2022) - HEALTHINF},
year={2022},
pages={336-343},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0010785300003123},
isbn={978-989-758-552-4},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2022) - HEALTHINF
TI - Harena Semantics: A Framework to Support Semantic Annotation in Citizen Science Systems
SN - 978-989-758-552-4
IS - 2184-4305
AU - Pantoja, F.
AU - Filho, M.
AU - Santanchè, A.
PY - 2022
SP - 336
EP - 343
DO - 10.5220/0010785300003123
PB - SciTePress