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Authors: Cinzia Di Giusto 1 ; Cédric Gaucherel 2 ; Hanna Klaudel 3 and Franck Pommereau 3

Affiliations: 1 Université Côte d’Azur, CNRS, I3S, France ; 2 AMAP - INRA, CIRAD, CNRS, IRD, Université Montpellier, France ; 3 IBISC, Univ Evry, Université Paris-Saclay, Evry, France

ISBN: 978-989-758-353-7

Keyword(s): Rewriting Systems, Similarity Rate, Pattern Matching, Ecosystems.

Abstract: In this paper we consider discrete qualitative models of ecosystems viewed as collections of interacting living (animals, plants. . . ) and nonliving entities (air, water, soil. . . ), whose conditions of appearance/disappearance are controlled by a set of formal rules (i.e., processes). We present here a rule-based method allowing to compare ecosystems. The method relies on a measure of similarity and on an optimization algorithm. In addition, the proposed method allows to detect patterns (i.e., ecological processes or sets of processes) in ecosystems. We have validated the method by applying it against a set of models and patterns provided by ecologists.

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Paper citation in several formats:
Di Giusto, C.; Gaucherel, C.; Klaudel, H. and Pommereau, F. (2019). Pattern Matching in Discrete Models for Ecosystem Ecology.In Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS, ISBN 978-989-758-353-7, pages 101-111. DOI: 10.5220/0007485801010111

@conference{bioinformatics19,
author={Cinzia Di Giusto. and Cédric Gaucherel. and Hanna Klaudel. and Franck Pommereau.},
title={Pattern Matching in Discrete Models for Ecosystem Ecology},
booktitle={Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS,},
year={2019},
pages={101-111},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0007485801010111},
isbn={978-989-758-353-7},
}

TY - CONF

JO - Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS,
TI - Pattern Matching in Discrete Models for Ecosystem Ecology
SN - 978-989-758-353-7
AU - Di Giusto, C.
AU - Gaucherel, C.
AU - Klaudel, H.
AU - Pommereau, F.
PY - 2019
SP - 101
EP - 111
DO - 10.5220/0007485801010111

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