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Authors: Leonor Rib 1 ; Ricard Gavaldà 2 ; Jose Manuel Soria 3 and Alfonso Buil 1

Affiliations: 1 Institut de Recerca del HSCSP, Spain ; 2 Universitat Politècnica de Catalunya, Spain ; 3 Unit of Genomics of Complex Diseases and Institut de Recerca del HSCSP, Spain

ISBN: 978-989-8425-36-2

Keyword(s): Literature mining, Knowledge discovery, Bayesian Networks.

Related Ontology Subjects/Areas/Topics: Algorithms and Software Tools ; Bioinformatics ; Biomedical Engineering ; Data Mining and Machine Learning ; Databases and Data Management

Abstract: In the Era of Information researchers have utilized the Web to make their knowledge readily available. The Web is an important tool to improve the communication in the research community. But, the large amounts of information available makes it difficult to access the information that is needed. We present SalamboMiner, a Text-Mining tool that helps biomedical researchers to obtain the information about the genetics of complex diseases which is in the published biomedical literature. The methodology is based in the idea of co-citation: the co-citation of two concepts gives the significance of the relationship between the pair of concepts. In addition, the co-citation allows to infer new relationships that are not explicitly said in the literature. By using a Bayesian network, we infer the significant relationships between those concepts that are co-cited in two steps.

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Paper citation in several formats:
Rib, L.; Gavaldà, R.; Manuel Soria, J. and Buil, A. (2011). SalamboMiner - A Biomedical Literature Mining Tool for Inferring the Genetics of Complex Diseases.In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2011) ISBN 978-989-8425-36-2, pages 143-148. DOI: 10.5220/0003143201430148

@conference{bioinformatics11,
author={Leonor Rib. and Ricard Gavaldà. and Jose Manuel Soria. and Alfonso Buil.},
title={SalamboMiner - A Biomedical Literature Mining Tool for Inferring the Genetics of Complex Diseases},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2011)},
year={2011},
pages={143-148},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003143201430148},
isbn={978-989-8425-36-2},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 1: BIOINFORMATICS, (BIOSTEC 2011)
TI - SalamboMiner - A Biomedical Literature Mining Tool for Inferring the Genetics of Complex Diseases
SN - 978-989-8425-36-2
AU - Rib, L.
AU - Gavaldà, R.
AU - Manuel Soria, J.
AU - Buil, A.
PY - 2011
SP - 143
EP - 148
DO - 10.5220/0003143201430148

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