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Authors: Federico Buti ; Flavio Corradini ; Emanuela Merelli and Luca Tesei

Affiliation: University of Camerino, Italy

Keyword(s): Process Calculi, Spatial Simulation, Calculus Refinement, Computational Biology.

Related Ontology Subjects/Areas/Topics: Biological Systems ; Complex Systems Modeling and Simulation ; Computer Simulation Techniques ; Dynamical Systems Models and Methods ; Formal Methods ; Simulation and Modeling ; Simulation Tools and Platforms

Abstract: The Shape Calculus is a bio-inspired timed and spatial calculus for describing 3D geometrical shapes moving in a space. Its purpose is twofold: i) modelling and formally verifying (not only) biological systems, and ii) simulating the models for validation and hypothesis testing. The original geometric primitives of the calculus are highly abstract: the associated simulator needs to attach a lot of code to the model specification in order to perform an effective simulation. In this work we propose a calculus refinement in which a detailed 3D characterization of the geometric primitives is injected into the syntax of the calculus. In this way, models written with the new syntax can be directly simulated.

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Paper citation in several formats:
Buti, F.; Corradini, F.; Merelli, E. and Tesei, L. (2012). A Geometrical Refinement of Shape Calculus Enabling Direct Simulation. In Proceedings of the 2nd International Conference on Simulation and Modeling Methodologies, Technologies and Applications - SIMULTECH; ISBN 978-989-8565-20-4; ISSN 2184-2841, SciTePress, pages 218-227. DOI: 10.5220/0004060802180227

@conference{simultech12,
author={Federico Buti. and Flavio Corradini. and Emanuela Merelli. and Luca Tesei.},
title={A Geometrical Refinement of Shape Calculus Enabling Direct Simulation},
booktitle={Proceedings of the 2nd International Conference on Simulation and Modeling Methodologies, Technologies and Applications - SIMULTECH},
year={2012},
pages={218-227},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0004060802180227},
isbn={978-989-8565-20-4},
issn={2184-2841},
}

TY - CONF

JO - Proceedings of the 2nd International Conference on Simulation and Modeling Methodologies, Technologies and Applications - SIMULTECH
TI - A Geometrical Refinement of Shape Calculus Enabling Direct Simulation
SN - 978-989-8565-20-4
IS - 2184-2841
AU - Buti, F.
AU - Corradini, F.
AU - Merelli, E.
AU - Tesei, L.
PY - 2012
SP - 218
EP - 227
DO - 10.5220/0004060802180227
PB - SciTePress

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