EasyModel 1.1: User-friendly Stochastic and Deterministic Simulations for Systems Biology Models

Jordi Bartolome, Rui Alves, Francesc Solsona

2020

Abstract

EasyModel is a user-friendly web application that uses Wolfram webMathematica for performing simulations and analysis of systems biology models. EasyModel lets users create new models, load models from the BioModels database, and import preexisting models from SBML files. EasyModel mainly targets the student of bioinformatics or systems biology without the need of having Mathematica programming knowledge. In addition, expert programmers may find it useful as a tool for quickly implementing new models in Mathematica, which can then be downloaded as Mathematica notebooks to be tailored locally for more advanced simulation and analysis. The version described in this manuscript introduces the stochastic simulation feature. EasyModel is freely available at https://easymodel.udl.cat

Paper Citation

in Harvard Style

Bartolome J., Alves R. and Solsona F. (2020). EasyModel 1.1: User-friendly Stochastic and Deterministic Simulations for Systems Biology Models. In Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) - Volume 3: BIOINFORMATICS; ISBN 978-989-758-398-8, SciTePress, pages 145-149. DOI: 10.5220/0008966001450149

in Bibtex Style

@conference{bioinformatics20,
author={Jordi Bartolome and Rui Alves and Francesc Solsona},
title={EasyModel 1.1: User-friendly Stochastic and Deterministic Simulations for Systems Biology Models},
booktitle={Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) - Volume 3: BIOINFORMATICS},
year={2020},
pages={145-149},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0008966001450149},
isbn={978-989-758-398-8},
}

in EndNote Style

TY - CONF

JO - Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) - Volume 3: BIOINFORMATICS
TI - EasyModel 1.1: User-friendly Stochastic and Deterministic Simulations for Systems Biology Models
SN - 978-989-758-398-8
AU - Bartolome J.
AU - Alves R.
AU - Solsona F.
PY - 2020
SP - 145
EP - 149
DO - 10.5220/0008966001450149
PB - SciTePress