PAPAyA: A Highly Scalable Cloud-based Framework for Genomic Processing

Francois Andry, Nevenka Dimitrova, Alexander Mankovich, Vartika Agrawal, Anas Bder, Ariel David

Abstract

The PAPAyA platform has been designed to ingest, store and process in silico large genomics datasets using analysis algorithms based on pre-defined knowledge databases with the goal to offer personalized therapy guidance to physicians in particular for cancers and infectious diseases. This new highly scalable, secure and extensible framework is deployed on a cloud-based digital health platform that provides generic provisioning and hosting services, identity and access management, workflow orchestration, device cloud capabilities, notifications, scheduling, logging, auditing, metering as well as specific patient demographic, clinical and wellness data services that can be combined with the genomics analytics results.

References

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Paper Citation


in Harvard Style

Andry F., Dimitrova N., Mankovich A., Agrawal V., Bder A. and David A. (2016). PAPAyA: A Highly Scalable Cloud-based Framework for Genomic Processing . In Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS, (BIOSTEC 2016) ISBN 978-989-758-170-0, pages 198-206. DOI: 10.5220/0005668401980206


in Bibtex Style

@conference{bioinformatics16,
author={Francois Andry and Nevenka Dimitrova and Alexander Mankovich and Vartika Agrawal and Anas Bder and Ariel David},
title={PAPAyA: A Highly Scalable Cloud-based Framework for Genomic Processing},
booktitle={Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS, (BIOSTEC 2016)},
year={2016},
pages={198-206},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0005668401980206},
isbn={978-989-758-170-0},
}


in EndNote Style

TY - CONF
JO - Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS, (BIOSTEC 2016)
TI - PAPAyA: A Highly Scalable Cloud-based Framework for Genomic Processing
SN - 978-989-758-170-0
AU - Andry F.
AU - Dimitrova N.
AU - Mankovich A.
AU - Agrawal V.
AU - Bder A.
AU - David A.
PY - 2016
SP - 198
EP - 206
DO - 10.5220/0005668401980206