loading
Papers Papers/2022 Papers Papers/2022

Research.Publish.Connect.

Paper

Authors: Nick van Nielen ; Fons Verbeek and Lu Cao

Affiliation: Leiden Institute of Advanced Computer Science, Leiden University, Leiden, The Netherlands

Keyword(s): L-System, Arborized 3D Biological Model, Web Application.

Abstract: In biology, arborized structures are well represented and typically complex for visualization and analysis. In order to have a profound understanding of the topology of arborized 3D biological model, higher level abstraction is needed. We aim at constructing an abstraction of arborized 3D biological model to an L-system that provides a generalized formalization in a grammar to represent complex structures. The focus of this paper is to combine 3D visualization, analysis and L-system abstraction into a single web application. We designed a front-end user interface and a back-end. In the front-end, we used A-Frame and defined algorithms to generate and visualize L-systems. In the back-end, we utilized the Vascular Modelling Toolkit’s (VMTK) centerline analysis methods to extract important features from the arborized 3D models, which can be applied to L-system generation. In addition, two 3D biological models: lactiferous duct and artery are used as two case studies to verify the functi onality of this web application. In conclusion, our web application is able to visualize, analyse and create L-system abstractions of arborized 3D models. This in turn provides workflow-improving benefits, easy accessibility and extensibility. (More)

CC BY-NC-ND 4.0

Sign In Guest: Register as new SciTePress user now for free.

Sign In SciTePress user: please login.

PDF ImageMy Papers

You are not signed in, therefore limits apply to your IP address 18.188.3.236

In the current month:
Recent papers: 100 available of 100 total
2+ years older papers: 200 available of 200 total

Paper citation in several formats:
van Nielen, N.; Verbeek, F. and Cao, L. (2024). Visualizing, Analyzing and Constructing L-System from Arborized 3D Model Using a Web Application. In Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOIMAGING; ISBN 978-989-758-688-0; ISSN 2184-4305, SciTePress, pages 257-264. DOI: 10.5220/0012272100003657

@conference{bioimaging24,
author={Nick {van Nielen}. and Fons Verbeek. and Lu Cao.},
title={Visualizing, Analyzing and Constructing L-System from Arborized 3D Model Using a Web Application},
booktitle={Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOIMAGING},
year={2024},
pages={257-264},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0012272100003657},
isbn={978-989-758-688-0},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOIMAGING
TI - Visualizing, Analyzing and Constructing L-System from Arborized 3D Model Using a Web Application
SN - 978-989-758-688-0
IS - 2184-4305
AU - van Nielen, N.
AU - Verbeek, F.
AU - Cao, L.
PY - 2024
SP - 257
EP - 264
DO - 10.5220/0012272100003657
PB - SciTePress