STATISTICAL MECHANICS OF PROTEINS IN THE RANDOM COIL STATE

Cigdem Sevim Bayrak; Burak Erman

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Paper

STATISTICAL MECHANICS OF PROTEINS IN THE RANDOM COIL STATE

Topics: Biostatistics and Stochastic Models; Genomics and Proteomics; Sequence Analysis

In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 0BIOSTEC, 220-225, 2012 , Vilamoura, Algarve, Portugal

Authors: Cigdem Sevim Bayrak and Burak Erman

Affiliation: Koc University, Turkey

Keyword(s): Rotational isomeric state, Random coil, Denatured state.

Related Ontology Subjects/Areas/Topics: Bioinformatics ; Biomedical Engineering ; Biostatistics and Stochastic Models ; Genomics and Proteomics ; Sequence Analysis

Abstract: Denatured proteins are mostly partially folded and compact proteins. A statistical analysis on thermodynamic properties is presented to describe and characterize denatured proteins. Conformational free energy, energy, entropy and heat capacity expressions are derived using the Rotational Isomeric States model of polymer theory. The state space and the probabilities of each state are comprised from a coil database. Properties for the denatured state are obtained for a sample set of proteins taken from the Protein Data Bank. Thermodynamic expressions of denatured state are derived.

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Paper citation in several formats:

Sevim Bayrak, C. and Erman, B. (2012). STATISTICAL MECHANICS OF PROTEINS IN THE RANDOM COIL STATE. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS; ISBN 978-989-8425-90-4; ISSN 2184-4305, SciTePress, pages 220-225. DOI: 10.5220/0003785202200225

@conference{bioinformatics12,
author={Cigdem {Sevim Bayrak}. and Burak Erman.},
title={STATISTICAL MECHANICS OF PROTEINS IN THE RANDOM COIL STATE},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS},
year={2012},
pages={220-225},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003785202200225},
isbn={978-989-8425-90-4},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS
TI - STATISTICAL MECHANICS OF PROTEINS IN THE RANDOM COIL STATE
SN - 978-989-8425-90-4
IS - 2184-4305
AU - Sevim Bayrak, C.
AU - Erman, B.
PY - 2012
SP - 220
EP - 225
DO - 10.5220/0003785202200225
PB - SciTePress