loading
Papers Papers/2022 Papers Papers/2022

Research.Publish.Connect.

Paper

Paper Unlock

Authors: Maria José Villanueva ; Francisco Valverde and Oscar Pastor

Affiliation: Universidad Politécnica de Valencia, Spain

Keyword(s): Variation detection, Alignment tools, Software engineering.

Related Ontology Subjects/Areas/Topics: Algorithms and Software Tools ; Bioinformatics ; Biomedical Engineering ; Sequence Analysis

Abstract: Nowadays, the search of variations in DNA samples according to a reference sequence is performed using several bioinformatic tools. Due to the process complexity, none of these tools fulfill all the functionality required by biologists. For that reason, the definition of an integration process between these different tools becomes a mandatory requirement. One interesting issue is that bioinformatic tools do not comply with any standard format for expressing the output reports. As a consequence, the flow among tools must be manually solved. This paper proposes a conceptual model in order to formalize how the output from alignment tools must be produced. This work also provides a textual format based on this conceptual model. Thanks to both contributions, the integration is handled in the problem space and the related technological details are avoided. As a proof of concept of these ideas, the proposed format has been applied in a DNA sequence analysis process which uses two bioinforma tic tools. (More)

CC BY-NC-ND 4.0

Sign In Guest: Register as new SciTePress user now for free.

Sign In SciTePress user: please login.

PDF ImageMy Papers

You are not signed in, therefore limits apply to your IP address 3.145.12.242

In the current month:
Recent papers: 100 available of 100 total
2+ years older papers: 200 available of 200 total

Paper citation in several formats:
Villanueva, M.; Valverde, F. and Pastor, O. (2011). APPLYING CONCEPTUAL MODELING TO ALIGNMENT TOOLS ONE STEP TOWARDS THE AUTOMATION OF DNA SEQUENCE ANALYSIS. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2011) - BIOINFORMATICS; ISBN 978-989-8425-36-2; ISSN 2184-4305, SciTePress, pages 137-142. DOI: 10.5220/0003142001370142

@conference{bioinformatics11,
author={Maria José Villanueva. and Francisco Valverde. and Oscar Pastor.},
title={APPLYING CONCEPTUAL MODELING TO ALIGNMENT TOOLS ONE STEP TOWARDS THE AUTOMATION OF DNA SEQUENCE ANALYSIS},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2011) - BIOINFORMATICS},
year={2011},
pages={137-142},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003142001370142},
isbn={978-989-8425-36-2},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2011) - BIOINFORMATICS
TI - APPLYING CONCEPTUAL MODELING TO ALIGNMENT TOOLS ONE STEP TOWARDS THE AUTOMATION OF DNA SEQUENCE ANALYSIS
SN - 978-989-8425-36-2
IS - 2184-4305
AU - Villanueva, M.
AU - Valverde, F.
AU - Pastor, O.
PY - 2011
SP - 137
EP - 142
DO - 10.5220/0003142001370142
PB - SciTePress

- Science and Technology Publications, Lda.
RESOURCES

Proceedings

Papers

Authors

Ontology

CONTACTS

Science and Technology Publications, Lda
Avenida de S. Francisco Xavier, Lote 7 Cv. C,
2900-616 Setúbal, Portugal.

Phone: +351 265 520 185 (National fixed network call)
Fax: +351 265 520 186
Email: info@scitepress.org

EXTERNAL LINKS

PRIMORIS

INSTICC

SCITEVENTS

CROSSREF

PROCEEDINGS SUBMITTED FOR INDEXATION BY:

dblp

Ei Compendex

SCOPUS

Semantic Scholar

Google Scholar

Microsoft Academic