loading
Papers

Research.Publish.Connect.

Paper

Authors: Citlalli Mejía-Almonte and Julio Collado-Vides

Affiliation: Center for Genomic Science, UNAM, Av. Universidad, Cuernavaca and Mexico

ISBN: 978-989-758-382-7

Keyword(s): Formal Ontology, Domain Ontology, Gene Regulation, Bacteria.

Related Ontology Subjects/Areas/Topics: Artificial Intelligence ; Domain Analysis and Modeling ; Knowledge Engineering and Ontology Development ; Knowledge Representation ; Knowledge-Based Systems ; Ontology Sharing and Reuse ; Symbolic Systems

Abstract: Here we present a formal ontological model that explicitly represents regulatory interactions among the main objects involved in transcriptional regulation in bacteria. These formal relations allow the inference of gene regulation physiology from gene regulation mechanisms. The automatically instantiated classes can be used to assist in the mechanistic interpretation of gene expression experiments done at the physiological level, such as RNA-seq. This is the first step to develop a more comprehensive ontology focused on prokaryotic gene regulation. The ontology is available at https://github.com/prokaryotic-regulation-ontology

PDF ImageFull Text

Download
CC BY-NC-ND 4.0

Sign In Guest: Register as new SciTePress user now for free.

Sign In SciTePress user: please login.

PDF ImageMy Papers

You are not signed in, therefore limits apply to your IP address 3.94.202.172

In the current month:
Recent papers: 100 available of 100 total
2+ years older papers: 200 available of 200 total

Paper citation in several formats:
Mejía-Almonte, C. and Collado-Vides, J. (2019). Towards the Prokaryotic Regulation Ontology: An Ontological Model to Infer Gene Regulation Physiology from Mechanisms in Bacteria.In Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management - Volume 2: KEOD, ISBN 978-989-758-382-7, pages 495-499. DOI: 10.5220/0008387804950499

@conference{keod19,
author={Citlalli Mejía{-}Almonte. and Julio Collado{-}Vides.},
title={Towards the Prokaryotic Regulation Ontology: An Ontological Model to Infer Gene Regulation Physiology from Mechanisms in Bacteria},
booktitle={Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management - Volume 2: KEOD,},
year={2019},
pages={495-499},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0008387804950499},
isbn={978-989-758-382-7},
}

TY - CONF

JO - Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management - Volume 2: KEOD,
TI - Towards the Prokaryotic Regulation Ontology: An Ontological Model to Infer Gene Regulation Physiology from Mechanisms in Bacteria
SN - 978-989-758-382-7
AU - Mejía-Almonte, C.
AU - Collado-Vides, J.
PY - 2019
SP - 495
EP - 499
DO - 10.5220/0008387804950499

Login or register to post comments.

Comments on this Paper: Be the first to review this paper.